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The Genomic Standards Consortium and beyond: best practice in genomics research

Collection published: 12 July 2012

Launched at the 13th Genomic Standards Consortium workshop in Shenzhen in March 2012 (at which GigaScience co-hosted a session), this thematic series of discussion and research articles from the conference and wider research community aims to highlight best practice in genomics research.

		Technical Note The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome Daniel McDonald, Jose C Clemente, Justin Kuczynski, Jai Rideout, Jesse Stombaugh, Doug Wendel, Andreas Wilke, Susan Huse, John Hufnagle, Folker Meyer, Rob Knight, J Caporaso GigaScience 2012, 1:7 (12 July 2012) Abstract \| Full text \| PDF
		Review A call for an international network of genomic observatories (GOs) Neil Davies, Chris Meyer, Jack A Gilbert, Linda Amaral-Zettler, John Deck, Mesude Bicak, Philippe Rocca-Serra, Susanna Assunta-Sansone, Kathy Willis, Dawn Field GigaScience 2012, 1:5 (12 July 2012) Abstract \| Full text \| PDF \| Editor’s summary The Genomic Observatories network plans to digitally characterize whole ecosystems of specific ‘research hotspots’, with the aim of better enabling predictive modeling of biodiversity dynamics
		Review The future of DNA sequence archiving Guy Cochrane, Charles E Cook, Ewan Birney GigaScience 2012, 1:2 (12 July 2012) Abstract \| Full text \| PDF \| Editor’s summary Sustainable DNA archiving will depend on the understanding that not all data is created - or preserved - equally
		Commentary On the evolving portfolio of community-standards and data sharing policies: turning challenges into new opportunities Susanna-Assunta Sansone, Philippe Rocca-Serra GigaScience 2012, 1:10 (12 July 2012) Abstract \| Full text \| PDF

		Technical Note The Biological Observation Matrix (BIOM) format or: how I learned to stop worrying and love the ome-ome Daniel McDonald, Jose C Clemente, Justin Kuczynski, Jai Rideout, Jesse Stombaugh, Doug Wendel, Andreas Wilke, Susan Huse, John Hufnagle, Folker Meyer, Rob Knight, J Caporaso GigaScience 2012, 1:7 (12 July 2012) Abstract \| Full text \| PDF
		Review A call for an international network of genomic observatories (GOs) Neil Davies, Chris Meyer, Jack A Gilbert, Linda Amaral-Zettler, John Deck, Mesude Bicak, Philippe Rocca-Serra, Susanna Assunta-Sansone, Kathy Willis, Dawn Field GigaScience 2012, 1:5 (12 July 2012) Abstract \| Full text \| PDF \| Editor’s summary The Genomic Observatories network plans to digitally characterize whole ecosystems of specific ‘research hotspots’, with the aim of better enabling predictive modeling of biodiversity dynamics
		Review The future of DNA sequence archiving Guy Cochrane, Charles E Cook, Ewan Birney GigaScience 2012, 1:2 (12 July 2012) Abstract \| Full text \| PDF \| Editor’s summary Sustainable DNA archiving will depend on the understanding that not all data is created - or preserved - equally
		Commentary On the evolving portfolio of community-standards and data sharing policies: turning challenges into new opportunities Susanna-Assunta Sansone, Philippe Rocca-Serra GigaScience 2012, 1:10 (12 July 2012) Abstract \| Full text \| PDF