Table 3

Annotation summary
Scaffolds mapped to: Scaffolds mRNAs+ Repeats
N (%)# N (%)* % of the scaffold N (%)* % of the scaffold
G. gallus genome only 53,345 22% 1,256 5% 8% 88,157 76% 7.7%
Unmapped 105,030 43% 1,429 2% 22% 125,470 48% 19.4%
T. guttata genome only 26,078 11% 4,206 21% 7% 87,592 93% 2.1%
Mismatched 54,621 22% 12,030 27% 2% 266,478 98% 1.0%
G. gallus and T. guttata 6,873 3% 1,426 26% 3% 32,994 98% 1.2%
Total 245,947 100% 20,347 11% 4% 600,691 59% 4.3%

+ mRNAs are from G. gallus.

# Percentage values are from total number of scaffolds.

* Percentage values are from the number of scaffolds in that category.

Oleksyk et al.

Oleksyk et al. GigaScience 2012 1:14   doi:10.1186/2047-217X-1-14

Open Data